Biobase
Version 0.1.0.0 revision 0 uploaded by ChristianHoener.
Package meta
- Synopsis
- Base library for bioinformatics
- Description
Base library for bioinformatics providing the following features:
RNA primary and secondary structure
Infernal covariance models
Turner and Vienna energy files
efficient format for RNA sequences, based on the vector package
import from strings, bytestrings, fasta files (using the bio library)
secondary structure manipulation functions, im- and export of Vienna-dotbracket notation
import Turner energy files
im- and export of Vienna 2.0 energy files
import covariance models
basic manipulation of covariance models
Stockholm file format manipulation
algebraic ring class
instances for Gibbs free energy, partition function probabilities, and scores
conversion between different entities
ready for the vector library
- Author
- Christian Hoener zu Siederdissen
- Bug reports
- n/a
- Category
- Bioinformatics
- Copyright
- Christian Hoener zu Siederdissen, 2010
- Homepage
- http://www.tbi.univie.ac.at/~choener/Haskell/
- Maintainer
- choener@tbi.univie.ac.at
- Package URL
- n/a
- Stability
- experimental