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The latest version of Biobase is 0.3.1.1-0.

Biobase

Version 0.1.0.1 revision 0 uploaded by ChristianHoener.

Package meta

Synopsis
Base library for bioinformatics
Description

Base library for bioinformatics providing the following features:

  • RNA primary and secondary structure

  • Infernal covariance models

  • Turner and Vienna energy files

RNA sequences and energy files:

  • efficient format for RNA sequences, based on the vector package

  • import from strings, bytestrings, fasta files (using the bio library)

  • secondary structure manipulation functions, im- and export of Vienna-dotbracket notation

  • import Turner energy files

  • cf. http://rna.urmc.rochester.edu/NNDB/index.html

  • im- and export of Vienna 2.0 energy files

Covariance models:

  • import covariance models

  • basic manipulation of covariance models

  • Stockholm file format manipulation

Utility classes:

  • algebraic ring class

  • instances for Gibbs free energy, partition function probabilities, and scores

  • conversion between different entities

  • ready for the vector library

Author
Christian Hoener zu Siederdissen
Bug reports
n/a
Category
Bioinformatics
Copyright
Christian Hoener zu Siederdissen, 2010
Homepage
http://www.tbi.univie.ac.at/~choener/Haskell/
Maintainer
choener@tbi.univie.ac.at
Package URL
n/a
Stability
experimental

Components