BiobaseFR3D
Version 0.2.3.0 revision 0 uploaded by ChristianHoener.
Package meta
- Synopsis
- Importer for FR3D resources
- Description
Provides importers for FR3D resource files. Of particular interest are basepairs files which describe canonical and non-canonical (non-Watson-Crick) base pairings in RNA secondary structure.
The original FR3D paper is:
FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of Mathematical Biology/ (2008) 56:215–252.
Changes since any 0.1.*:
Zero-based indexing (FR3D is one-based!) for sequence positions. We do not change the nucleotide PDB number.
Some sanity checks, a number of FR3D files fall through at this and need to be checked for consistency
- Author
- Christian Hoener zu Siederdissen
- Bug reports
- n/a
- Category
- Bioinformatics
- Copyright
- Christian Hoener zu Siederdissen, 2011
- Homepage
- http://www.tbi.univie.ac.at/~choener/
- Maintainer
- choener@tbi.univie.ac.at
- Package URL
- n/a
- Stability
- experimental