The latest version of BiobaseInfernal is 0.8.1.0-0.
BiobaseInfernal
Version 0.7.0.1 revision 0 uploaded by ChristianHoener.
Package meta
- Synopsis
- Infernal data structures and tools
- Description
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.
The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.
This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).
Changes in 0.7.0.0
work-in-progress release (some features missing)
working CM parsing
type defns have changed. using phantom types to specify what kind of model we are working with
using conduit instead of iteratee
- Author
- Christian Hoener zu Siederdissen
- Bug reports
- n/a
- Category
- Bioinformatics
- Copyright
- Christian Hoener zu Siederdissen, 2011
- Homepage
- http://www.tbi.univie.ac.at/~choener/
- Maintainer
- choener@tbi.univie.ac.at
- Package URL
- n/a
- Stability
- experimental