lib:BiobaseInfernal

Modules

• Biobase.SElab.CM
• Biobase.SElab.CM.Import
• Biobase.SElab.CM.ModelStructure
• Biobase.SElab.CM.Types
• Biobase.SElab.Common.Parser
• Biobase.SElab.HMM
• Biobase.SElab.HMM.Import
• Biobase.SElab.HMM.Types
• Biobase.SElab.Model
• Biobase.SElab.Model.Import
• Biobase.SElab.Model.Types
• Biobase.SElab.Taxonomy
• Biobase.SElab.Taxonomy.Import

Dependencies

• BiobaseTypes lib:BiobaseTypes >=0.1.2 && <0.1.3
• BiobaseXNA lib:BiobaseXNA >=0.9.3 && <0.9.4
• DPutils lib:DPutils >=0.0.1 && <0.0.2
• PrimitiveArray lib:PrimitiveArray >=0.8.0 && <0.8.1
• aeson lib:aeson >=0.9
• attoparsec lib:attoparsec >=0.12
• base lib:base >=4.7 && <5.0
• binary lib:binary >=0.7
• bytestring lib:bytestring >=0
• cereal lib:cereal >=0.4
• cereal-text lib:cereal-text >=0.1
• cereal-vector lib:cereal-vector >=0.2
• containers lib:containers >=0
• data-default lib:data-default >=0.5
• deepseq lib:deepseq >=1.4
• filepath lib:filepath >=1.3
• hashable lib:hashable >=1.2
• lens lib:lens >=4.0
• parallel lib:parallel >=3.0
• pipes lib:pipes >=4.0
• pipes-attoparsec lib:pipes-attoparsec >=0.5
• pipes-bytestring lib:pipes-bytestring >=2.0
• pipes-parse lib:pipes-parse >=3.0
• pipes-safe lib:pipes-safe >=2.2
• pipes-zlib lib:pipes-zlib >=0.4
• primitive lib:primitive >=0.5
• strict lib:strict >=0.3
• string-conversions lib:string-conversions >=0.4
• text lib:text >=1.0
• text-binary lib:text-binary >=0.1
• transformers lib:transformers >=0
• tuple lib:tuple >=0.3
• unordered-containers lib:unordered-containers >=0.2
• utf8-string lib:utf8-string >=1.0
• vector lib:vector >=0.10
• vector-th-unbox lib:vector-th-unbox >=0.2
• zlib lib:zlib >=0.6

Reverse dependencies

Direct only. Not exhaustive.

• BiobaseInfernal bench:parsing
• BiobaseInfernal exe:cmsearchFilter
• BiobaseInfernal test:properties
• CMCompare lib:CMCompare
• acme-everything lib:acme-everything
• cmv exe:CMCV
• cmv exe:CMCWStoCMCV
• cmv exe:CMCtoHMMC
• cmv exe:CMV
• cmv exe:CMVJson
• cmv exe:HMMCtoCMC
• cmv lib:cmv