lib:biohazard
Modules
- Bio.Adna
- Bio.Align
- Bio.Bam
- Bio.Bam.Evan
- Bio.Bam.Fastq
- Bio.Bam.Filter
- Bio.Bam.Header
- Bio.Bam.Index
- Bio.Bam.Pileup
- Bio.Bam.Reader
- Bio.Bam.Rec
- Bio.Bam.Regions
- Bio.Bam.Rmdup
- Bio.Bam.Trim
- Bio.Bam.Writer
- Bio.Base
- Bio.Prelude
- Bio.Streaming
- Bio.Streaming.Bgzf
- Bio.Streaming.Bytes
- Bio.Streaming.Furrow
- Bio.Streaming.Parse
- Bio.Streaming.Vector
- Bio.TwoBit
- Bio.Util.MMap
- Bio.Util.Nub
- Bio.Util.Numeric
- Bio.Util.Storable
- Bio.Util.Text
- Control.Monad.Log
Dependencies
- attoparsec lib:attoparsec >=0.13 && <0.14
- base lib:base >=4.8 && <4.14
- base-prelude lib:base-prelude >=1.2 && <1.2.1
- bytestring lib:bytestring >=0.10.6 && <0.11
- containers lib:containers >=0.5 && <0.7
- directory lib:directory >=1.2.2 && <1.4
- exceptions lib:exceptions >=0.6.1 && <0.11
- hashable lib:hashable >=1.2.3.2 && <1.4
- monad-control lib:monad-control >=1.0 && <1.1
- optparse-applicative lib:optparse-applicative >=0.13 && <0.16
- primitive lib:primitive >=0.6.1 && <0.8
- semigroups lib:semigroups >=0.18 && <0.20
- stm lib:stm >=2.4 && <2.6
- streaming lib:streaming >=0.1.4.2 && <0.3
- text lib:text >=1.2.0.2 && <1.3
- transformers lib:transformers >=0.4.2 && <0.6
- transformers-base lib:transformers-base >=0.4 && <0.5
- unix lib:unix >=2.7.1 && <2.8
- unordered-containers lib:unordered-containers >=0.2.5.1 && <0.3
- vector lib:vector >=0.11 && <0.13
- vector-algorithms lib:vector-algorithms >=0.8 && <0.9
- zlib lib:zlib >=0.6 && <0.7
Reverse dependencies
Direct only. Not exhaustive.
- biohazard exe:afroengineer
- biohazard exe:bam-fixpair
- biohazard exe:bam-meld
- biohazard exe:bam-resample
- biohazard exe:bam-rewrap
- biohazard exe:bam-rmdup
- biohazard exe:bam-trim
- biohazard exe:count-coverage
- biohazard exe:dmg-est
- biohazard exe:fastq2bam
- biohazard exe:glf-consensus
- biohazard exe:gt-call
- biohazard exe:gt-scan
- biohazard exe:jivebunny
- biohazard exe:mt-anno
- biohazard exe:mt-ccheck
- biohazard exe:redeye-dar
- biohazard exe:redeye-div
- biohazard exe:redeye-pileup
- biohazard exe:redeye-single
- biohazard exe:wiggle-coverage