lib:bioinformatics-toolkit

Modules

• Bio.ChIPSeq.FragLen
• Bio.Data.Bam
• Bio.Data.Bed
• Bio.Data.Bed.Types
• Bio.Data.Bed.Utils
• Bio.Data.Fasta
• Bio.Data.Fastq
• Bio.GO
• Bio.GO.Parser
• Bio.Motif
• Bio.Motif.Alignment
• Bio.Motif.Merge
• Bio.Motif.Search
• Bio.RealWorld.BioGRID
• Bio.RealWorld.ENCODE
• Bio.RealWorld.Ensembl
• Bio.RealWorld.GDC
• Bio.RealWorld.GENCODE
• Bio.RealWorld.ID
• Bio.RealWorld.Reactome
• Bio.RealWorld.UCSC
• Bio.RealWorld.Uniprot
• Bio.Seq
• Bio.Seq.IO
• Bio.Utils.BitVector
• Bio.Utils.Functions
• Bio.Utils.Misc
• Bio.Utils.Overlap
• Bio.Utils.Types

Dependencies

• HsHTSLib lib:HsHTSLib >=1.9.2
• IntervalMap lib:IntervalMap >=0.5.0.0
• aeson lib:aeson >=0
• aeson-pretty lib:aeson-pretty >=0
• attoparsec lib:attoparsec >=0
• base lib:base >=4.11 && <5.0
• bytestring lib:bytestring >=0.10
• bytestring-lexing lib:bytestring-lexing >=0.5
• case-insensitive lib:case-insensitive >=0
• clustering lib:clustering >=0
• conduit lib:conduit >=1.3.0
• conduit-extra lib:conduit-extra >=0
• containers lib:containers >=0.5
• data-default-class lib:data-default-class >=0
• data-ordlist lib:data-ordlist >=0
• double-conversion lib:double-conversion >=0
• hexpat lib:hexpat >=0
• http-conduit lib:http-conduit >=2.1.8
• math-functions lib:math-functions >=0
• matrices lib:matrices >=0.5.0
• microlens lib:microlens >=0
• microlens-th lib:microlens-th >=0
• mtl lib:mtl >=2.1.3.1
• parallel lib:parallel >=3.2
• primitive lib:primitive >=0
• split lib:split >=0
• statistics lib:statistics >=0.13.2.1
• text lib:text >=0.11
• transformers lib:transformers >=0.3.0.0
• unordered-containers lib:unordered-containers >=0.2
• vector lib:vector >=0
• vector-algorithms lib:vector-algorithms >=0
• word8 lib:word8 >=0

Reverse dependencies

Direct only. Not exhaustive.

• acme-everything lib:acme-everything
• bbi test:tests
• bioinformatics-toolkit bench:bench
• bioinformatics-toolkit exe:mergeMotifs
• bioinformatics-toolkit exe:mkindex
• bioinformatics-toolkit exe:viewSeq
• bioinformatics-toolkit test:tests