The latest version of xsact is 1.7.3-0.
xsact
Version 1.6 revision 0 uploaded by GwernBranwen.
Package meta
- Synopsis
- Cluster EST sequences
- Description
Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:
xsact; implements a complete multiple-matching clustering algorithm.
xcerpt; Extract sequences matching a list of labels.
xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.
xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.
- Author
- Ketil Malde
- Bug reports
- n/a
- Category
- Bioinformatics
- Copyright
- n/a
- Homepage
- http://malde.org/~ketil/
- Maintainer
- Ketil Malde <ketil@ii.uib.no>
- Package URL
- n/a
- Stability
- n/a